Welcome to pyQms’s documentation!

The latest Documentation was generated on: Mar 20, 2020

• Introduction
  • Summary
  • Abstract
  • pyQms module
  • Documentation
  • Implementation
  • Download
  • Citation
    • Full article
    • Early access article version
    • DOI
  • Installation
    • pyQms docs recompiling and extending
  • Tests
  • LICENSE
  • Publications and project using pyQms for quantification
  • Contact information
• Quick start
  • Download and installation
  • Matching a peak list
  • Access and interpret the results
  • Quantify peptides in a whole LC-MS run
  • Use the adaptors, Luke
  • Further examples and more adavanced usage

Contents

• Isotopologue Library
• Result Class
• Chemical composition
• Unimod mapper
• Adaptors
• Parameters
• Frequently asked questions

Examples

Example Scripts

pyQms comes with mupltiple example script which can be used to test the fucntionality and can be used as templates for own scripts.

• Example Scripts
  • General and quick start
  • Basic usage
  • Advanced usage
  • Plotting and visualizattion

Indices and tables

• Index
• Module Index
• Search Page